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I am trying to run basic SST related examples from `examples/hello/`
Reader: `sstReader/sstReader.py`
Writer: `sstWriter/sstWriter.py`
But, the SST reader always gets stuck when using `RDMA` data…
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Hi all,
Thanks for the wonderful work. I am trying to install the docker image using apptainer on NCAR's casper supercomputer. I installed it successfully, but I cannot launch it. Below is my proc…
Yefee updated
4 months ago
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### Description of the bug
CONCOCT exceeding 24 runtime. Only action for 20 hours in .command.log and .command.err files these are being updated with the following repeated error:
p and running. Ch…
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### Description of the bug
I tried to run nf-core/mag with the `test` profile on a new compute cluster and got the following error:
```
-[nf-core/mag] Pipeline completed with errors-
WARN: Singula…
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### Description of the bug
Hello, I am a new user (both in Nextflow and oncoanalyser) and was wondering if you could help me with this error - it seems that the tools being called by the pipeline (li…
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### What is the problem?
Running Ray 1.5.1
### Reproduction (REQUIRED)
I'm using the following SLURM script, which is basically copypasted from the documentation:
```
#!/bin/bash
#SBAT…
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### Operating System
Other Linux (please specify below)
### Other Linux
redhat
### Workflow Version
v.1.1.0
### Workflow Execution
Command line
### EPI2ME Version
_No response_
### CLI comma…
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Provide singularity version of the docker since on HPC singularity is the allowed container type.
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**Describe the bug**
During inference, certain image raise a ValueError: "can't extend empty axis 0 using modes other than 'constant' or 'empty'"
This seems to be related to the image, not the model…
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Hi,
I have been having issues with running Clair3 v1.0.4 on a HG002 dataset from ONT.
The tool seems to write quite a lot of intermediate files, such as vcf.gz, to the TMP directory which unfortun…