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command in Ubuntu: make -j 4 && make install
[ 3%] Built target generated
[ 6%] Built target ffindex
[ 8%] Built target hhviterbialgorithm_with_celloff_and_ss
[ 10%] Built target hhviterbialg…
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Hi,
The code for specifying pairing_key for generating the pqt files is not working unless the taxa in the headers in the input a3m file are denoted "OS=" and you specify uniprot_hits.a3m as the na…
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Thank you for your work, but I had some trouble trying to install and use it.
At the end is my error message. I noticed that these two issues are very similar to my error message:
https://github…
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**Describe the bug**
Changing the value of the a3m "shareDir" configuration setting in the "enduro.toml" configuration file causes the a3m processing workflow to fail with a fatal error.
**To Re…
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Hello, I want to use a protein 3di sequence to get the MSA file as .a3m format, but i dont know how to do it, could you please give some suggestions? Thanks.
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Hello,
The .ipynb script works correctly for .a3m files generated from ColabFold; however, when I try to use the generated files in AlphaFold2 version 2.3, I get the following error message:
Tr…
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Hello,
I have tried to use your tool to predict the protein protein interaction between 2 protein databases I have.
I have installed the AlphaFastPPi conda environment and also downloaded the alpha …
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Dear all,
I know this topic has been addressed but I cannot make it right.. I need to merge to custom made a3m files of an heterodimer to run colabfold_batch in multimer mode.
What I tried is a…
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**Is your feature request related to a problem? Please describe.**
Whether generated by Enduro (through a child workflow) or included in a SIP, PREMIS XML files should be validated before the packa…
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Hey guys
Great work! I am trying to get OpenFold running on our cluster and having problems with hhblits on uniclust30. I adapted the longer paths to just "path" for privacy reasons. Help would be …