-
Hi,
I found No reads in Output of MMARGE.pl allele_specific_reads
samtools view
it was data from F1 mice
I run:
MMARGE.pl allele_specific_reads -files S1_shifted_from_CAST_EIJ.sam -ind …
-
I hope this message finds you well. I am currently working on a project involving GWAS summary statistics. Your `MungeSumstats` package has been incredibly useful for standardizing these datasets, an…
-
Hello,
Thank you for developing this nice tool.
I'm interested in analyzing allele-specific expression (ASE) in my single-cell RNA-sequencing (scRNA-seq) data. This data comes from offspring tissues…
-
Add HiC-pro functions for allele-specific analysis
-
Hi. i have provided the two different alleles in my reference sequence. however, i'm not sure if kallisto can handle this properly. also, what happens in the case of homozygosity? is the tpm reported …
-
py-ARD doesn't seem to have a redux mode for first-field DNA nomenclature yet.
The current US organ allocation system supports all three of these HLA specificities: `DRB3*02:02`, `DRB3*02`, and `DR…
-
Hi Venkat,
I am trying to clarify about FACET's output when we have at least one subclone along with the clonal cluster. I understand that is indicated by K in FACET's notation with K=1 is clonal.
…
-
Is it possible to make an allele-specific map with for genomes with ploidy > 2?
-
Add an option to filter by genomic position or specific variants instead of gene names. This will enhance the flexibility of the script, allowing users to target specific regions or variants more prec…
-
I would like some confirmation on the definition of SVLEN when used with different representations of specific variants. I used Tandem Repeats as an example but that could be applicable to others.
…