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Seems that people still have problems to get the correct input for the tools: https://help.galaxyproject.org/t/re-qiime2-diversity-alpha/13332
At the moment data inputs have an option filter and a …
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Make alpha-diversity
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Hello and thanks for the awesome tool.
I have a question, I see you efficiently introduced a method to plot and represent beta-diversity between samples (dissimiliarities).
I was thinking, what …
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Here is the error
```
> ps_obj #Data quality control
> library(metacoder)
> obj$data$otu_counts
> print(obj)
1186 taxa: aab. Bacteria, aac. Bacteroidota ... cjf. uncultured_delta, cjl. un…
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Dear team MicrobiomeStat,
I am appreciate very much your software contribution. I am new using Lineal Mixed models.
Please can you suggest me If I am used my data correctly.
In my experiment…
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Hi everyone !
Just a simple question : Does the alpha diversity simpson on phyloseq is the gini-simpson ?
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Hi @ChiLiubio,
Thanks for this great package!
I am analysing samples that are paired case and control (the sample table has a column with case or control and another column with a sample pair ID), a…
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hello，I download the data & code,install all the library above，but when I try plot the first image，It went wrong. Here is the traceback info, looks like something wrong about rbind function，Can u help…
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Hi team
This is a powerful package and your up-to-date tutorial is very helpful.
I was wondering if you could help with the downstream analysis for functional diversity? https://github.com/gavinm…
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Hello!
While reading several papers about microbiome analysis, I have found a regular recommendation for normalization prior to analyses. But this sounds strange to me for alpha diversity, since es…