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Hi,
I was running a search on TMT data (based on the TMT phospho template) - with 3 variable modifications on **one** amino acid - all with distingt masses (as opposed to pSTY - 3 different AA, sam…
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#### Current behavior:
40 genes are discovered to be uncorrelated with their corresponding reactions in `Transport reactions`.
| Gene| UniProtID| Reaction| GPR| Correlation| Manually check |…
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Dear DiaNN team,
Thank you for developing amazing tool.
I'm trying to analyze plexDIA experiments.
It works well when using fixed modifications, such as SILAC.
However, it seems that the --c…
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I really like pepquery and have found this to be a valuable tool. However, I would also love to be able to search for specific modifications using the web version. Is there a way to input a peptide to…
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Thank you for making the code for the program available!
I have tried modeling different amino acid modifications with specified chirality, and the model I get out doesn't always maintain the chir…
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I am getting the following error
"Runtime error, Run failed: Value cannot be null (Parameter 'source')
Would you like to report this crash?
I am running XLMS mode. I am putting "Common Fixe…
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Unimod does not list multiple mods per site such as `Glu->pyro-Glu+Methyl` as separate modification, but assumes multiple mods per site to be possible. See email from the admin below.
```
We stoppe…
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hi @durrantmm, I am preparing to predict smORFs within a length of 100 amino acids. Can the SmORFinder tool handle this task effectively? Alternatively, what modifications could I make to the script t…
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Convert the `ComplexHeatmap` code to a function in the package. Allow users to select their given assay, and the start and end positions of the protein for plotting.
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**Describe the question or problem**
I am working with metablic 15N labelling, meaning that every nitrogen in every amino acid of a protein is replaced by 15N.
To search for these modifications, I …