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Aim: Import high confidence GO annotations (GO term to gene) for GO terms directly linked to CL terms - bidirectional by and object property restriction.
The links from GO terms to Genes (proteins)…
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In October JGI is updating to annotation 5.3
to sync with that we need to add a WLD for genomad that gets run as part of annotation pipeline.
Recommend setting this up as a separate WDL, having th…
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We should make our two main subworflows (``GENOME`` and ``GENOME_AND_ANNOTATION``) into workflows, as it makes more sense for the structure and modularization of the pipeline (we cannot use subworkflo…
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### Ask away!
Hello,
I am trying to get the demo model to work using the following script on HPC and I get a couple of error Plus 4 more processes waiting for tasks…
Doing reference based transcr…
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It should work for genome only if there are only genome, or genome_annotation if only genomes with annotations.
But we also need to test how the pipeline deals with mixed input. It run both subworkf…
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Hello, your work is truly impressive. I believe the most valuable aspect is the pipeline that enables automatic face text annotation. It would be fantastic if you could release the relevant code.
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Looks like the text_pipeline is not operational.
i'm trying to use scan and replace,
but the replace expects annotations of type AnnotationResults,
But it's getting normal strings or empty lists f…
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### Contact Details [Optional]
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### System Information
```
ZENML_LOCAL_VERSION: 0.55.3
ZENML_SERVER_VERSION: 0.55.3
ZENML_SERVER_DATABASE: mysql
ZENML_SERVER_DEPLOYMENT_TYPE: other…
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Add support for image formatting pipelines to the Desktop version of DIVE.
The current pipeline running is located: https://github.com/Kitware/dive/blob/main/client/platform/desktop/backend/native/…
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Great work! Could you release the data annotation pipeline?