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Hi OPERA-MS developer,
I would like to ask where I could find the assembly graph. I searched subdirectories in the output folder, but didn't find any gfa or fastg files. It looks like it was genera…
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Dear Mikhail
`contig_3` in `assembly_graph.gfa` is missing in `assembly.fasta`:
```shell
$ grep ">" assembly.fasta
>contig_1
>contig_2
```
Preview of `assembly_graph.gfa`:
```
H …
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Whenever trying to run GraphBin with an assembly graph coming from Canu, I keep getting the error when reading the reads " ERROR - Unexpected 'tig00XXXXX-XX-XXXXX' ". [....] Please make sure you have …
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Add tests for [MetaCoAG](https://github.com/metagentools/MetaCoAG) in `gbintk`.
- [ ] test spades input
- [ ] test megahit input
- [ ] test flye input
- [ ] test that the [bins have the correct …
Vini2 updated
13 hours ago
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Add tests for [GraphBin2](https://github.com/metagentools/GraphBin2) in `gbintk`.
- [ ] test spades input
- [ ] test megahit input
- [ ] test flye input
### GraphBin2 on spades
File name: `…
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### Reporting an Issue or Missing Feature
Running Microsoft.Graph cmdlets, such as Connect-MgGraph and Get-MgApplication, produce an assembly conflict error if run after PnP.PowerShell assemblies hav…
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Vers: 1.16.0 \ 1.16.1-nightly
Steps to reproduce:
- Create console app
- Add Microsoft.Graph(.Beta)
- Add PnP.Framework
- Add simple PnP template (to project root for simplicity)
- Add 3 lines…
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### Description of bug
binspreader threw an error while parsing assembly_graph_with_scaffolds.gfa. It looks like there are semicolons where the program was expecting tabs. I did not modify the assemb…
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Hi,
Firstly, thanks for making this tool available for the community. In our hand this tools has been very efficient and has produced very good results with illumina-MinION hybrid data.
I wante…
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### Description of bug
Running pathracer on an assembly graph generated from SPAdes4 and a DNA hmm profile, makes it crash after extracting the unique edge paths.
[test_data.zip](https://github.com/…