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| KG Name | Traits | Uniprot Subset | UPA | Rhea | EC | GO | MONDO | HPO | CTD |
|-----------------------|--------------------------------------…
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In https://github.com/geneontology/pipeline/issues/206 we're making steps to reform the pipeline kernel. Currently, @dustine32 and I are working on the Assembly step ("shovel2pile") which should take …
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Hi,
Thanks for developing this useful tool. I assembled two haplotypes from a diploid plant using the hifiasm tool with HiFi and HiC data. Now, I use HiC data to anchor two haplotypes. You mentioned …
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Dear author,
Thank you for developing such a milestone software, which greatly accelerates the efficiency of assembly.
I am currently conducting assembly of a large genome of a plant species, whi…
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Was there the mature manner to integrate this tools into assembly pipeline like hifiasm or canu? It seems that no alignment files are ever generated intermediatly during the assembly by hifiasm.
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Here's my config, I think everything except the last line is irrelevant to the issue at hand:
```cs
var container = new DependencyInjectionContainer(c => c.AutoRegisterUnknown = false);
…
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Hi, I have metagenomic data (paired-end, 150 bp per reads, two ~7 Gb fastq files for one sample) of 114 samples. These samples come from surface water of a river from four seasons. I want to finally g…
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We have implemented a custom language that includes numerous standard features such as syntax highlighting, goto definition, IntelliSense, a debugger, and some code lens, among others.
At present, …
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### Background
Until recently, a plant genome sequence could be assumed to consist of sequences corresponding to 1n chromosomes, plus some remaining unplaced scaffolds, and maybe also plastid genomes…
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I am scaffolding several ONT+illumina assemblies (flye) against a T2T reference genome of a sister species. Each of my assemblies represents a specific strain of my species of interest--so while I exp…