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Hi,
I was trying to do m6A modified basecalling of data generated from R9 flowcell by using trained RNN model i.e. res_dna_r941_min_modbases-all-context_v001 by using guppy v3.5.1.
But, unfortunat…
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Dear author
I'd like to ask you a question,I used megalodon to call methylation and found that in the centromeric region, it showed a hypomethylation state,which corresponds to the peak of CHIP,Thi…
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Hi,
I was trying to do m6A modified basecalling of data generated from R9 flowcell by using trained RNN model i.e. res_dna_r941_min_modbases-all-context_v001 by using guppy v3.5.1.
But, unfortunat…
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### Ask away!
The latest version uses dna_r10.4.1_e8.2_400bps_sup@v4.3.0 for basecalling with MinKNOW.
However, there are currently no available options to select. The latest version available is v…
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### Operating System
Other Linux (please specify below)
### Other Linux
Ubuntu 20.04.4
### Workflow Version
v1.2.2
### Workflow Execution
EPI2ME Desktop (Local)
### Other workf…
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# Issue Report
## Please describe the issue:
I am currently trialing using a home desktop GPU to speedup basecalling (over CPU hardware).
The device I have access to is a NVIDIA GeForce GTX 106…
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Good day,
I am trying to detect base modifications but I keep getting a specific error.
I basecalled using the Promethion instrument and got multiple bam files.
I then merged these bam files usi…
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I'm getting the following error:
```
2024-04-18 15:45:14.641 cgjobinfo_jobid: 20748
2024-04-18 15:45:14.642 ==================== sc_filter_default_scisoformfile10x-isoquant_sc-sminimap2_splice-ba…
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I have a ab1 file tracy basecall only generate 121 bases but it visualized normal after that. What's the reason tracy can not doing the basecalling after that? Thank you for help!
![7E983462-3D65-4…
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Hi,
I am seeing a much larger use of system RAM when using the v5.0.0 models with dorado 0.7.1
I have a PC with i7 13700K, 64GB of RAM and an RTX4090, as per the recommended specs for the P2 Solo…