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We were wondering if there are any plans to expand PhysIO with BIDSapps-style read in of data (i.e. inputting a BIDS subject directory and automatically running PhysIO on the contained logfile-fMRI fi…
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Hello,
I tried to anonymize a whole exam using a DICOMDIR structure. I used the `anonymizer.anonymize` fuction. It worked properly, not raising the DICOMDIR error in `_load_dataset` method of the `…
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Hello!
I have build the docker image from the Dockerfile and now I'd like to re-run the data analysis. I have downloaded the post-fMRIprep data from datalad, but running the docker image gives an e…
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I was wondering if you had an example of the minimum BIDS inputs I would need to get going with the MRtrix3 connectome BIDSApp? Is there perhaps an example dataset?
Thanks for all your help!
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I had removed the `pipeline_description.json` file from the `afids-auto-train` workflow in #10. I think this might actually be a requirement for BIDSapps, and we should consider putting an updated ver…
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## The problem
I don't know what the cleanest way of implementing this in a BidsApp is, but it seems it would be useful to have a "rerun" capability a la `datalad rerun`. Given pretty much everythi…
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https://github.com/Washington-University/HCPpipelines
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This new feature can be accomplished by:
- [ ] Addition of new arguments ``--custom_ckpt_brain_localisation`` and ``--custom_ckpt_brain_localisation`` in ``pymialsrtk/parser.py``(where the parser o…
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Add a BIDSExecVersion field to the schema, to specify that a descriptor describes a BIDSApp. See discussion in https://docs.google.com/document/d/104HLZedFtx0TaXEUwd7eyWvJUlc0CcSUtCzwjNgmGxE/edit?ts=5…
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Dear @rhancockn, @neurosutton, @bpinsard
@Remi-Gau and I are trying to get the HCPPipelines bids-app updated and tested again :)
We are currently running into the problem that the test data is …