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create some sample bigwig and bigbed files from NeMO dato to test ingest in to EpiVIZ
zhang data?
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This is a combo-issue to refactor BigWig and BigBed stores as node modules
They include similar code and data structures actually so they're a bit intertwined, it is some question of whether bigbed…
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[]. Open URL dialog size is single line height, not convenient for entering track urls
[x]. Open bigwig/bigbed/.. file mask usability on windows - some option is preselected (bigbed) and uses can't f…
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Show bigBed files in autocompletion/Open as Multiple locations action. So get ~ bed files behaviour
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Those files are bigBed instead of bigWig?
And one question tho is that what are those files? Predicted cell-specific enhancers and promoters from PLAC-seq?
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> BigBed files can store extra fields in addition to the predefined BED fields. If you add extra fields to your bigBed file, you must include a .as (AutoSQL) format file describing the fields.
Motiva…
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Hello,
Recently there was some work with BED files and RefSeq/Genbank chromosome IDs which typically have a period in them for versioning purposes (e.g. "NC_000001.11"). This is currently not allow…
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Many tables such as ncbiIncidentDB and wgEnsembleFooBar contains only a filename record pointing bigBed / bigWig files.
Some mechanism to support access to these files are required. Automatic downloa…
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Hello,
I have found a discrepancy in the number of fields and some other metadata when using bigtools vs ucsc and it is having an impact on how things appear in the browser.
Basically, when I t…
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The VariantTrack feature details fields are specialized so you can mouseover a field and it will tell you what it is in a tooltip. This helps with understanding unfamiliar field names
VCF has a hea…