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command in Ubuntu: make -j 4 && make install
[ 3%] Built target generated
[ 6%] Built target ffindex
[ 8%] Built target hhviterbialgorithm_with_celloff_and_ss
[ 10%] Built target hhviterbialg…
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Hi, thanks for providing these partitions. If I run `wget https://bioinf.uni-greifswald.de/bioinf/partitioned_odb11/Viridiplantae.fa.gz` the file downloads successfully, however `gunzip` and`zcat` bot…
jgroh updated
3 weeks ago
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**Bug description**
I get the following error message every time when trying to upload .mzml files into SIRIUS (v. 6.0.6):
Error when importing data! Cause: java.lang.Exception: com.fasterxml.jack…
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I run ：sirius login -u xxx -p
error:
PM de.unijena.bioinf.ms.frontend.SiriusCLIApplication run
SEVERE: Unexpected Error!
picocli.CommandLine$UnmatchedArgumentException: Unmatched argument at inde…
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Hello,
First, thank you for this cool tool.
However, I got this error. It's the latest version by the way. Can you help me with it?
Input files DNA, FASTA:
Remapping.fasta
Warning: Empty fasta …
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### Is there an existing module for this?
- [X] I have searched for the existing module
### Is there an open PR for this?
- [X] I have searched for existing PRs
### Is there an open issue for this…
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Hi,
I have been trying (quite hard) to make Sirus use Gurobi as the iLP solver instead of the built-in CLP, but so far to no avail.
Could you please help me see what I'm doing wrong?
I was ru…
flass updated
2 months ago
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The problem with hardcoding download links is that the next user to update this brick will need to update those links. It is better to scrape the links from some source site if it is available. In fac…
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Hello.
I am trying DuctApe with the tutorial dataset (smeliloti), and I couldn't pass the first step, since `dape init` failed to create the sqlite3 database
I'm using a xubuntu 22.04.4 LTS OS r…
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I do have a problem with calculating similarity matrices, especially the Tanimoto Score.
I am currently working with Sirius 5.8.6. and I have a working CLI code for this.
I encountered an out of bou…