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Creation of standards by which bioinformatics resources can be systematically assessed plus a review process defining the assessment criteria and procedure
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Hi all,
We are trying to get this pipeline working with the included control dataset so we can use it to characterize a variety of novel bacteriophages that we think may be circularly permuted with…
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- [x] Pema (ARMS)
- [x] QZIP (AWI)
- [x] Tourmaline (NOAA)
- [x] Banzai (MBON)
- [x] ANACAPA (UCLA)
- [x] SLIM (University of Geneva)
- [x] CASCABEL (NIOZ)
- [x] ABYSS (Ifremer)
- [x] MgNIFY (…
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Hi Dr.Camargo:
I find this nice project when I read your IMG/VR v4 manuscripts published on Nucleic Acids Research. I have some doubts about this and hope you can help me about them.
1.I tried this…
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Would be useful to see pipeline examples in a bioinformatics context.
- Tophat on samples
- Index bams
- Run RSEM on each
- Merge outputs together in a matrix (CPM, TPM, FPKM)
- Run RNAQC on combined …
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- [ ] https://github.com/biocompute-objects/portal_userdb/issues/358
- [ ] https://github.com/biocompute-objects/portal_userdb/issues/360
- [ ] https://github.com/biocompute-objects/portal_userdb/issu…
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https://gdc.cancer.gov/about-data/gdc-data-processing
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This is so cool, and makes it possible for citizen scientists to run their own bioinformatics (without access to clusters!)
Could you show a couple of examples of running a vanilla hello world Next…
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Good morning,
Our team is currently working to add Pelops to our bioinformatics pipeline. Specifically, we would like to use it within an internally developed tool that currently accepts VCFs and a…
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and similar terms, e.g. computational/ biomedical pipelines,
e.g. as per https://www.wikidata.org/w/index.php?title=Special:Search&limit=500&offset=0&profile=default&search=bioinformatics+pipeline