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Hi @jrobinso!
I was wondering if we can show bisulfite mode with igv notebook
Thanks!
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Thank you for developing this tool; I think it might be very useful for sharing our research data.
I want to ask you for advice in applying `bamboozle` to bisulfite converted data.
Bisulfite trea…
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Hello,
I'm trying to run FastQ-Screen on bisulfite data on sheep. I've managed to run FastQ-Screen successfully before as a QC check on the data (on 80GB memory), but am having trouble with memory …
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I want to compare the methylation frequency.
It is said that in the example data set we have also included bisulfite data from ENCODE for the same region of chromosome 20.
I didn't find the fil…
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```
One of the biggest "errors" in bisulfite sequencing is reads that are
completely unconverted. We have investigated this and Yaping has a nice script
to detect them. It's not been a big problem …
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Hi,
I was wondering if there's a way to change the color scheme for bisulfite mode from red and blue to something else.
I tried to change the color legends for methylation but that did not change …
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Data.Name | Sargasso.Strategy | difference | bisulfite | master
-- | -- | -- | -- | --
rna_mouse_10 | best | 00:00:11 | bisulfite_seq=00:13:30 | master=00:13:41
rna_mouse_10 | conservative | -0.00…
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Hello,
Please add [asTair](https://bitbucket.org/bsblabludwig/astair/src/master/) to the pipeline as [an alternative tool](https://www.nature.com/articles/s41587-019-0041-2) to analyse **methylseq*…
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kindly help me solve with issue.Thanks
pkgupta@pkgupta:~/Downloads/bisulfite/BatMeth2-master$ make
make[2]: Leaving directory '/Downloads/bisulfite/BatMeth2-master/src'
Making all in scripts
…
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I am currently using minfi to analyse my DNA methylation data from Illumina EPIC v2.0. And, I get the following error when I run preprocessIllumina:
```
Error in h(simpleError(msg, call)) :
erro…