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Hi!
I was wondering if it's possible to specify more than one lineage and download path for BUSCO in the .yaml file.
Thanks for the help!
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Dear Dr. Lind,
I'm generating a custom eukdetect db and I'm stucked at get_uncomputed_taxid_per_busco.py. It fails with the following message:
"""
python /home/qi47rin/proj/00-git/EukD…
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BUSCO for original assembly
BUSCO for non stranded assembly (n=12 gametogenesis January ACR samples included)
BUSCO for stranded assembly (n=5 deep dive ACR samples included)
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Hi,
I am using hifiasm with parameter
hifiasm -o ./Hifiasm3_l3/Gon --primary -t20 --purge-max -l3 -s 0.35 --h1 ./HIC/Raw_Data/filtered_Insect_S118_L004_R1_001.fastq.gz --h2 ./HIC/Raw_Data/filtered…
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Dear author, I got the assembly after running the software, but the estimated genome integrity is very low, C:54.2%[S:42.5%,D:11.7%],F:2.0%,M:43.8%,n:1013,E:4.0%, I am not sure what went wrong. I atta…
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Hi
Kindly advise, we are using conda version of quast 5.0.2
```
quast -t 28 -f -b -o quast_test -1 ../../R6_read1_trimmomatic_1PE.fastq.gz -2 ../../R6_read2_trimmomatic_2PE.fastq.gz R6_RcB5_…
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Hey Martin,
I want to re-do the BUSCO command using the script & head from the AutDeNovo.
However, this is the error message:
No module named 'busco'
There was a problem installing BUSCO or imp…
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Hello,
I have encountered the followinf error:
more SHADDVT3_asm_bp_hap1_p_ctg/run_blobtools_create.log
Reading all TSV files in ../window_stats
Traceback (most recent call last):
File "/s…
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Hi:
Like many, I really like your output for genome visualisation.
I would like to add the BUSCOs for my genome, but I have copied/pasted the written example to include in the json file, and when …