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sanger-tol
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genomeassembly
Implementation of ToL genome assembly workflows
https://pipelines.tol.sanger.ac.uk/genomeassembly
MIT License
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Don't run workflow CI when docs are pushed
#47
ksenia-krasheninnikova
closed
1 month ago
0
Fix: error fetching image to cache: while building SIF from layers
#46
gq1
closed
1 month ago
5
Joss paper
#45
ksenia-krasheninnikova
opened
1 month ago
2
add hic minimap2
#44
yumisims
closed
1 week ago
7
Multiple BUSCO lineages?
#43
malvaradol
opened
2 months ago
1
try free runner and increate resource for Github CI test
#42
gq1
closed
2 months ago
7
Update of hifiasm version
#41
ksenia-krasheninnikova
closed
2 months ago
12
Merge pull request #39 from sanger-tol/dev
#40
ksenia-krasheninnikova
closed
3 months ago
1
Release 0.10.0
#39
ksenia-krasheninnikova
closed
3 months ago
4
Release 0.10.0
#38
ksenia-krasheninnikova
closed
3 months ago
5
Fix path to the github test dataset
#37
ksenia-krasheninnikova
closed
3 months ago
2
Input & help files
#36
cintiaoi
opened
3 months ago
7
purge_dups and hifiasm?
#35
nikostr
opened
4 months ago
3
genomeassembly usage
#34
abdo3a
closed
5 months ago
2
Post-release merge into dev
#33
ksenia-krasheninnikova
closed
7 months ago
1
Added CITATION.cff
#32
muffato
closed
7 months ago
1
Zenodo tag
#31
ksenia-krasheninnikova
closed
7 months ago
2
Release 0.9.0 dev to main
#30
ksenia-krasheninnikova
closed
7 months ago
1
Release 0.9.0
#29
ksenia-krasheninnikova
closed
7 months ago
3
Release 1.0.0
#28
ksenia-krasheninnikova
closed
7 months ago
3
Enable organelles subworkflow
#27
ksenia-krasheninnikova
closed
4 months ago
12
Fixes before release
#26
ksenia-krasheninnikova
closed
7 months ago
1
Update paths for full test
#25
ksenia-krasheninnikova
closed
7 months ago
7
Updates to the code spotted when doing integration
#24
ksenia-krasheninnikova
closed
7 months ago
1
Large runner (16 core, 64G memory) and Singularity to run CI tests
#23
gq1
closed
7 months ago
5
Double quotes
#22
ksenia-krasheninnikova
closed
7 months ago
1
Fix path to config in tests
#21
ksenia-krasheninnikova
closed
7 months ago
1
Docs
#20
ksenia-krasheninnikova
closed
7 months ago
11
Updated config for running longranger with and without LSF
#19
muffato
closed
10 months ago
3
Subworkflow for organelles
#18
ksenia-krasheninnikova
closed
8 months ago
5
Update hic mapping
#17
ksenia-krasheninnikova
closed
9 months ago
1
Make model and prefix optional in purge dups
#16
ksenia-krasheninnikova
closed
1 year ago
1
Template merge
#15
ksenia-krasheninnikova
closed
10 months ago
2
Add raw assembly stage
#14
ksenia-krasheninnikova
closed
1 year ago
1
Implementation of purge dups subworkflow
#13
ksenia-krasheninnikova
closed
1 year ago
1
Merge genome stats into the main workflow
#12
ksenia-krasheninnikova
closed
1 year ago
0
Add scaffolding step
#11
ksenia-krasheninnikova
closed
1 year ago
1
Merge changes mapping HiC data
#10
ksenia-krasheninnikova
closed
1 year ago
0
Polishing
#9
ksenia-krasheninnikova
closed
1 year ago
0
Update dev
#8
ksenia-krasheninnikova
closed
1 year ago
1
Added the Martian template as an asset
#7
muffato
closed
1 year ago
2
Misc tidy up
#6
muffato
closed
1 year ago
1
Version check_samplesheet.py
#5
muffato
closed
1 year ago
1
Automate input normalisation
#4
muffato
closed
1 year ago
0
IO Subworkflow
#3
ksenia-krasheninnikova
closed
1 year ago
1
Scaffolding Workflow: basic workflow for yahs
#2
ksenia-krasheninnikova
closed
8 months ago
1
polishing subworkflow
#1
priyanka-surana
closed
1 year ago
0