-
Demo datasets
- Only needs to include one acquisition package and one analysis package.
- It would be ideal for data to be
-
MSID: 98002
Version: 2
Preprint DOI: https://doi.org/10.1101/2022.05.06.490864
## Step 1. Awaiting reviews
**Editorial to post reviews via hypothesis**
**Useful links:**
- DocMap: https://data-hu…
-
Reproducible computational environments for research
- Virtual environments, docker, git
Neural data handling and preprocessing
- Spiking data
- LFP
- Calcium imaging
- Widefield imaging
Single c…
-
Hi Biafra,
I am a new user of your analysis pipeline for calcium imaging. First, a big thank you developing this great tool.
We are currently using the pipeline to analyse calcium imaging data a…
-
Your setup:
1. Operating System: **Ubuntu 20.04.6 LTS**
2. Hardware type and RAM: **Intel Xeon Gold CPU 2 processors, 36 cores, 72 threads + 4 NVIDIA cards**
3. Python Version: **3.11.8**
4. C…
-
Hello Biafra,
First of all, I would like to thank you for the fantastic job in the Algorithms-based Neuroscience Analysis, it helps me a lot while studying calcium imaging analysis. Although I know…
-
In imaging.Calcium, the neuropil correction factor seems to be set with the constant `NEUROPIL_CORRECTION_FACTOR` which is set to 0.8.
However, in analysis.read_NWB, in the function list_subquantiti…
-
It is useful to know who is using scikit-image when planning funding proposals. I was looking a little into how one can extract information such as that presented in [GitHub's dependents view](https:/…
-
Hello!
I've seen from looking through previous posts that TRENTOOL is no longer being maintained, but I was hoping that someone here might still be able to help me troubleshoot an issue I've been h…
-
Hello all. I have embarked on using CP for time series analysis in conjunction with multiple cell labels. I am working with hour long calcium imaging data with over 2000 objects per experiment. We …