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cancer cells classic-like should be cancer classical cells according to the PDAC consensus classification (basal-like and classical).
"bulk references" could be confusing. Suggestion instead: cell-ty…
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rdfs:label "glandular epithelial cell"
definition "A specialized epithelial cell that is capable of synthesizing and secreting certain biomolecules."
SubClassOf:
- 'epithelial cell'
- 'part of' so…
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If it is a grouping class:
- Is It needed?
- Is classification under it complete?
- Is classification under it sustainable. Can we realistically populate classes - ideally with inferred classificatio…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Feature Description
Cell morphology (shape, size, nucleus, cytoplasm), color and staining (intensity, distribu…
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### Description of feature
The following methods look interesting:
```[tasklist]
### Tasks
- [ ] https://github.com/nf-core/scdownstream/issues/21
- [ ] https://github.com/nf-core/scdownstream/issue…
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I have segmented a WSI and extracted a 512x512 patch from it by `hap_cells = cells.cx[x:x+512, y:y+512]`.
![image](https://github.com/okunator/cellseg_gsontools/assets/38974891/bc52e37c-101b-41bd-a…
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@dosumis = I think no - most biologists would not group in this way - perhaps apart from some evo-devo folks studying the ancient evolutionary transitions (diploblast to triploblast?). Practically -…
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I propose a new UBKG model to address three separate requests.
# Requests
1. The UBKG should be the source of truth for the assay metadata currently managed in the value object of the soft assay t…
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There are three open issues for cell types: openMetadataInitiative/openMINDS_controlledTerms#149, openMetadataInitiative/openMINDS_controlledTerms#150 and openMetadataInitiative/openMINDS_instances#95…
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Hello,
I would like to download all human cCREs along with an annotation for each biosample. That is, instead of only having the cell-type agnostic classification, there would also be classificatio…