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Hi, I am trying to use cellguide to visualize seurat objects. I am able to launch cellguide in the browser but, as you can see at the bottom of the page, nothing gets displayed on my end. I'm not sure…
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Hello,
I successfully installed SeuratV3Wizard with its optional cellbrowser dependency, everything is working fine locally.
But then I tried to launch the app through a singularity image conta…
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Hi, I have a list of h5ad files from which i want to create a Census object
I want to do this in databricks.
I've just started exploring cellxgene-census and hit a roadblock.
We're supposed t…
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When trying to import the package I get the following error:
(commenting out the 4 final lines in analysis/gene_sets.py solved the problem for now)
import neals_python_functions as np
Traceback (…
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Hi,
I’ve been building my cellbrowsers for matrix files for a while now and was working fine but after some update the pipeline doesn’t seem to be working any more.
I’m trying to go from the matrix.…
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would need to make `clustifyr::get_ucsc_reference()` more robust
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**User story**
Some users might be interested in Ensembl IDs while others might want to use gene symbols. in v1.1.20 we added the `geneAlias` support for using one of the two (but not both)
**Pr…
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Hi all,
I'm wondering if there's a quick way to change the dotsize ("radius" in cellbrowser.conf) of cells in an already existing cellbrowser (built into a html site via `cbBuild`).
I noticed t…
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## User story
* As a cell browser data wrangler
* I want to enter project information (e.g. GEO accession, publication, etc.) in one place
* so that I can generate a desc.conf from the informati…
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Would this be of some interest?