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I encountered a bug called ValueError: too many values to unpack (expected 2) when I runned the following codes:
# Construct the flow expression matrices
commot_output_key = 'commot-CellPhoneDB_v4.0…
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When I use the creat_cellphonedb_file() function to generate the input files for CellPhoneDB, I encountered the following error:
`creat_cellphonedb_file(sce, Sample)`
Ensembl site unresponsive, …
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Hi,
When using cc_dotplot(toy_data, option = 'CellPhoneDB', n_top_ints = 15) to generate a dotplot, the color order and the size of the circles in the legend representing the score are exactly opp…
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Hey Denes,
Recently, CellPhoneDB got bumped to v5, and the data is stored here:
https://github.com/ventolab/cellphonedb-data/tree/master
Seems to have changed format from:
https://github.com/s…
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Hello,
I am trying to create a dot plot for a Cellphone DB output, but am consistently receiving a “key_error”: “cell_type”.
My h5ad counts file looks like this one (from the CellphoneDB docume…
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## Description
I encountered a KeyError when running the statistical analysis method in CellPhoneDB with interaction scoring enabled. I want to gracefully handle missing keys by returning np.nan inst…
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is:issue is:open can we use cellphonedb for proteomic data analysis. i have relative abudance of proteins among different samples (cells from different tissues.
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Hi, I wanted to convert a Seurat object built using mouse scRNA data to a new Seurat object with human orthologs. I would like to perform CellphoneDB analysis on the mouse data, but CellPhoneDB requir…
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Hi,
Thanks for the great package. I'm trying to use cellphone db v5 to find a connection in my dataset. I'm using this code with the dataset that I provided in the link below. I'm getting "No Cellp…
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Hi, thank you for developing this database. I have mouse single cells data and I want to use your database to do analysis using CellPhoneDB. CellPhoneDB needs protein, gene, complex, and interactions …