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Not sure if some of these are population phenotypes, since they represent the percentage of cells with a given cellular phenotype. Full list below, but some examples:
* Penetrance of cells that hav…
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[Single-cell RNA-seq denoising using a deep count autoencoder](https://www.nature.com/articles/s41467-018-07931-2#ref-CR33)
> **Denoising enables discovery of subtle cellular phenotypes**
> Aft…
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We have a lot of phenotypes in FYPO that describe something physical (cell or cellular component morphology, level of chemical, etc.) and specify when the phenotype is observed. Usually the "when" is …
mah11 updated
3 years ago
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The plant trait ontology [TO](https://obofoundry.org/ontology/to.html) is the conceptual counterpart of OBA, but it contains (or will soon contain, as per @diatomsRcool) some phenotypey terms now, lik…
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When researchers investigate developmental and / or cellular phenotypes and find no difference to parental strain, we annotate this as DDPHENO:0000142 wild type.
We have over 4,000 thus annotations…
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We have a rather complex phenotype regime regarding 'localization' of cell parts or molecules. we have the GO conform abnormal localization of another protein to an organelle caused by the mutation, a…
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http://www.esyn.org/builder.php?projectid=1396&type=Graph
- [x] Add MFs from PMID:21035342 referred to in the review "Rab small GTPase emerges as a regulator of TOR complex 2"
- [x] Add Sat…
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Katie, an undergrad in my lab, has been annotating papers that describe altered growth phenotypes, which led me to start working on this branch of the ontology again.
Currently, OMP has phenotype …
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So far I have only looked at processes that are entirely mitochondrial:
pombe
All species
Most of the issues appear to be from causally upstream, and their propagation.
We know ex…
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> A lack of tools to precisely control gene expression has limited our ability to evaluate relationships between expression levels and phenotypes. Here, we describe an approach to titrate expression o…