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Hi,
Thanks for your nice tool.
I can see all 13 chromosomes in juicebox. After running PlotHicGenome with the following command line; only 12 chromosomes were displayed in the plot.
My command…
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Hello,
I'm trying to run a script using HTSeq- count. I tried to use **--add-chromosome-info** as I need to have the chromosomal coordinate in my output file. Here is the script that I used:
**m…
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I am plotting runs of homozygosity and am using plot_StackedRuns. Is there any way to get 1 plot with all chromosomes instead of separate plots for each chromosome?
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chromosomes 1-3 have a difefrent block structure I think and thus break the code:
```
File "/mnt/c/development/varvis-download/development/bamnostic/extract_bam_subset.py", line 111, in
e…
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Dear author,
I apologize for bothering you. While using SoloTE to quantify transposable elements (TEs), I noticed that during the final step of splitting the BAM file, only a few chromosomes were l…
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Hello,
I noticed that you've modeled eQTLs on the X chromosome and I'm wondering whether is possible to make predictions of overall expression for haploid individuals (i.e. men) using the "slope" c…
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Some chromosomes have multiple intervals what's the problem, how do you choose them, is there a confidence score.
```
ChrB01 13133334 16966667
ChrB02 48940000 53939999
ChrB03 3341…
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Hi, I have a question about hicMergeMatrixBins behavior and I would like to ask you for some clarification.
I use hicexplorer 3.7.5 working with h5 files.
I've noticed, that hicMergeMatrixBins c…
qolba updated
1 month ago
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When I am running the process to the step of STAARpipeline/0.2.1Varinfo_gds.R, if I provide the chromosome as a sex chromosome, it will automatically recognize it as chrNA. I would like to know if thi…
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```
$ python3
Python 3.10.12 (main, Nov 20 2023, 15:14:05) [GCC 11.4.0] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> from SigProfilerSimulator import SigProf…