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Please add an option to output results in Clustal (aln) format. This is the standard for most multiple alignment software, and is certainly more appropriate for users to inspect the alignment results.…
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Hi PrimerTree developers,
I've come across a slight annoyance with the filter_seqs function, where if you have a custom clustal omega installation you will get an error:
`Error in system(paste(e…
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### Input
```
>test1
AANTTYKNYRENLLT
>test2
VTPENYIRNLL
>test3
AANTTYKNFREND
>test4
ANTTYKNFHRND
>test5
ANTTYKNYHRNRL
>test6
HTYQNYHQNLL
>test7
VTYQNYHQNLL
>test8
HTPENYIRNLL
>test…
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Hi,
For a large scale protein MSA test, I compiled the 5 largest Pfam families with 1-3 mio sequences and tried to align them with MAGUS.
Unfortunately, MAGUS failed apparently due to a recursion-…
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## ❓ Questions and Help
Hello,
I'm a new user of immunarch and I've question about the Clustal W.
Fisrtly, I have already installed Clustal W according to the guide: https://www.howtoinstall.me/ubu…
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The URL for clustal is http://mrs.cmbi.ru.nl/mrsws/clustal/wsdl. I would expect there to be an m6 folder in the URL as with blast and search. Does this mean that clustal runs in another version of mrs…
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https://bio.tools/clustalw is a super-old deprecated version of Clustal W and Clustal X, without documentation, license, _etc._, just a link to a software archive.
The "current" (well still quite "…
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In future versions we should provide check boxes to select organism so only user selected org alignment will be shown. Jkv
https://app.pageproofer.com/to/note/223753
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### The Problem
Using the Pairwise alignment in BioFSharp.Algorithms works fine but the only implemented way to write out this alignment in a correct format is in the BioFSharp.IO.Clustal module. A…