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Implemented coalescent population functions for gompertz, logistic and exponential.
Added new coalescent class that works with population functions `lphy/base/evolution/coalescent/CoalescentPopula…
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Would it be possible to have SINGER output the "full ARG" with marked recombination nodes (similar to that from msprime)? This would require maintaining unary nodes in the tree sequence, such as recom…
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There is a bug in the simul_coalescent_only. :-1: And perhaps in spatialCoalescentSimulation too :-1: :-1:
Sometimes, it seems that several nodes can arrive in a deme with 0 carrying capacity. He…
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https://github.com/spaceninjaserver/SpaceNinjaServer/assets/134111325/e6c953aa-10fc-40af-90eb-2be2d6d3e87a
Trying to put the segment
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* Skygrid
* Comparison of:
* Piecewise constant
* Continuous and piecewise linear
* Novel smooth population function?
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Hi,
I am using ASTRAL-III to make a species tree for a set of taxa. I ran two versions of this tree, one in which three species are considered distinct between two populations (they are currently c…
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Hello, I run the gt mode, and I met an error that two trees do not have the same topology, which means that phylogenetic tree from my mod file and the tree in coalescent unit from astral-species-tree.…
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Trying to simulate Coalescent genealogy with SH91 model implemented in CellCoal, but still feel confused about the distribution of the node times/root times after reading the reference paper, is there…
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**Describe the bug**
A clear and concise description of what the bug is.
the program fails to compile
**To Reproduce**
Give exact command you ran. When you run ASTRAL, make sure you keep the s…
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At the moment, in tsinfer, we don’t remove unary regions of nodes even if the nodes are unary everywhere. I.e. we have nodes which are coalescent in places and unary in other places, but also some ent…