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Hi all,
First of all, I apologize if this is not the proper place to ask usage questions.
Now, to the questions:
1. I have several structurally similar proteins (wild-types) and I am interest…
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**Description**
Code Embeddings are abstract representations of source code employed in multiple automation tasks in software engineering like clone detection, traceability, or code generation. This …
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>Parameterizing the approximate posterior of a generative model with neural networks has become a common theme in recent machine learning research. While providing appealing flexibility, this approach…
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Dear Tobias,
I hope this message finds you well.
I am currently engaged in a project that involves tracking the insertion sites of a transgene in the mouse genome. The transgene in question is ap…
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Hi, Thank you for creating Sim-it. I enjoyed your benchmarking paper and I have been trying to run Sim-it. I am trying to run it on a single chromosome (26 Mb). I have tried running it with the defaul…
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Hi, I have a question:
my config.txt is like:
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Project:
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Project name = Te…
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## Motivation
Pangenomes are key to understanding the distribution of gene content and synteny across closely related genomes. Currently, the driving force behind this strategy is sequence alignmen…
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I'm trying to think about how to make the Designspace + UFO format more suitable for variable fonts, so to speak "variable-first". That would mean several things potentially (throwing ideas here to st…
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I tried to simulate 1000 Inverted Duplication (IDUP) events with PacBio reads using hg38 genome, but the reads do not seem to contain any such events. I aligned the reads with pbmm2, and can't see any…
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Hello.
I am using this simulation tool and found that the tool need simulation Hap1 and Hap2. But it is not in the configure file. If I only input the reference, it will have the following error:
St…