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is there a way to get the nodecounts for a clasp-run
instead of the seconds needed ?
just how often the most inner loop was executed
ithat would be more useful for benchmarks, since seconds depe…
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I noticed that the counts you algorithm returns do not take into consideration the symmetry of the pattern, such that the same triad (i,j,k) can be counted multiple times according to the number of pe…
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For point-like validation sources, ON counts are approximately +/- 1 count/run different from ED (as far as I've seen, there's always fewer counts in gammapy). It would be nice to know which events th…
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Hi,
I tend to get massive read loss at the end. something like retaining 1-5% of reads when my input is >100k reads to start.
i understand this may all be quality filtering etc. but would be nice …
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Noting error in the automated genbank/clade-counts workflow:
- [2024-07-23](https://github.com/nextstrain/forecasts-ncov/actions/runs/10069513692)
- [2024-07-24](https://github.com/nextstrain/foreca…
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I've used proseg to segment several xenium datasets and each time I see squares in the distribution of transcripts and genes. These seem to follow the fov boundaries but I don't understand why cells a…
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.. or modify python script to use them optionally. With the default values, the tool fails: https://help.galaxyproject.org/t/decoupler-on-anndata-object-from-scanpy-task-fails/12753/3
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Hello! I am using your package with 4C-seq data from two biological replicates from a single condition, and the UMI counts look really strange. I used your vignette code to read in my data and generat…
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For parquet writer, we still miss following field in DataFile.
- nan_value_count
- distinct_counts
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not material, but the note count for notes in a notebook seems not to updated when notes are deleted...
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