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In working through #437 via #439 I noticed that collate has `collate` has much lower test coverage than other components within pycytominer. We could increase this coverage with some further tests, po…
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### Confirmation
- [X] I can confirm that this question/issue does not fall under any of the existing three issue types currently available.
### General question or description
Hello,
I …
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A lot of valuable documentation and notes have been taken in https://github.com/jump-cellpainting/pilot-data (private repo).
We should port over the common documentation from the JUMP repo to this …
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- [x] Make FOV data repo public
- [x] Make pilot data repo public
- [x] Add profile location info to the [master chart](https://docs.google.com/spreadsheets/d/1aq0exhd6-3rM8eFlAtW6tb5LzQTmvbjY-ofA-P…
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In the readme front page the link for the most recent cytominer-eval installation is given as
`pip install git+git://github.com/cytomining/cytominer-eval@f7f5b293da54d870e8ba86bacf7dbc874bb79565`
…
FloHu updated
2 years ago
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In the [cell health](https://github.com/broadinstitute/cell-health) project, I noticed some strange behavior with a specific plate.
The plate is `SQ00015221` coming from plate map `C-7161-01-LM6-01…
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Once we merge cytomining/pycytominer#160, we might decide to explicitly specify an optional `cytominer-database` dependency, using a solution as recommended by @bethac07.
See https://github.com/cyt…
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As currently defined in [aggregate.py](https://github.com/cytomining/pycytominer/blob/ac3ef680c1f4625aa1e8452b431afb5af8bcdd41/pycytominer/aggregate.py), the class `AggregateProfiles()` works using SQ…
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https://github.com/cytomining/pipeline-examples/blob/main/0.download.sh
aws s3 cp s3://imaging-platform/projects/2018_05_30_ResistanceMechanisms_Kapoor/workspace/backend/2020_07_02_Batch8/218360/21…
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in #320, @shntnu introduced a function, which @kenibrewer and I recommended be removed from the PR to be added separately later. This issue documents @shntnu 's progress in this effort:
> Would it…