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It might be many weeks before this could have priority, but it's fine to discuss ideas and requirements here.
Possible questions to discuss:
- What is the incremental input? An additional fasta file?…
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Hello,
When running Strainline I am getting an error that says `HPC.daligner: -P is an illegal option`.
When I run `HPC.daligner` the output I get is:
```
Usage: HPC.daligner [-vbad] [-t] [-…
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When I build/install a particular module, everything is fine. I have a hybrid package, with `.nim`, `.c`, and `.h` files, installed as both a library and as binaries. That works.
The problem comes …
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Currently, fc_run uses HPCAligner for constructing the daligner jobs. It will be useful to build the logic for distributing the jobs without calling HPCAligner. This will be necessary if we like to …
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Hi,
I tried to use DBdust but I got in daligner step `daligner: Track 'dust' annotation file is junk` with the following commands (https://github.com/thegenemyers/DALIGNER/issues/73).
By any chanc…
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Hi,
I just ran a falcon assembly on a large plant genome (1.4 Gb) using 50 smrtcells.
I kept the .las files and was wondering if i could use them with your new las2paf.pl script.
Or would you rathe…
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I've come across a data set that would consistently give me a free() error:
**\* Error in `daligner': free(): invalid pointer: 0x00007fc8040008c0 ***
Aborted (core dumped)
I tracked it down, and the…
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I am seeing current version of LAsort failing when called from daligner. As a workaround, I have been using an older version of LAsort.
ie
(dentistenv) [randy.bradley@ceres18-mem-2 workdir]$ da…
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Scripts in ParseLA.pl and Daligner_Reformate.pl are giving this error or uninitialized value.
Please let me know if you have a quick fix for this.
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Hi, Chris,
Behold:
```
> grep "^daligner" run_jobs.sh | wc
5022 623205 8255675
{dgordon}e217:/net/eichler/vol26/15000/whole_genome_assembly/nobackups/chimp/assemblies/falcon3/0-rawreads
```
how…