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**Topic**
Data ingress and preprocessing pipelines
**How is the topic relevant to the tric-dt themes?**
**How does it relate to the wider topic of digital twinning?**
Efficient data access, pr…
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Consistent and transparent AIRR preprocessing pipelines. AIRR data is processed from FASTQ to FASTA reads in a way that is consistent between repositories and between studies with similar protocols. T…
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## Expected Behavior
## Current Behavior
Green is real time.
Purple or red is calculated(estimated) time.
8 hours run
![photo_2024-09-07_23-44-37](https://github.com/user-attachments/asse…
DRMPN updated
3 weeks ago
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## Motivations
Data library is a great starting point for the "extract" portion of dcpy, but there are multiple ways its not meeting our needs. Our main area of focus is data quality, both on the p…
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Hello, thank you for this very useful repo!
I am facing issues with Lightglue TensorRT optimization: I converted [superpoint_lightglue.trt.onnx](https://github.com/fabio-sim/LightGlue-ONNX/releases…
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I was trying to QC the 200K UKB WES data using the preprocessing with QC pipeline and I am finding the final genotypes.h5 file to have no genotypes at all (the file size was 8Mb). I did some digging a…
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SQLFlow is suitable to write the total AI pipeline jobs using one only SQL program, e.g. we can do data pre-processing on some original table, and generate tables of training, validating dataset, this…
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We should E2E test the "edit data" flow from the review page
Also unit test: https://github.com/loculus-project/loculus/pull/2001#discussion_r1609824536
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### Motivation: Why do you think this is important?
The `tf.data.Dataset` object encapsulates data as well as a preprocessing pipeline. It can be used in model `fit`, `predict`, and `evaluate` metho…
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### Softwares
"general.softwares": "FSL 5.0.4 and Feat v6 ",
### Input data
derivatives (fMRIprep)
### Additional context
$ narps_description -t 4TQ6 --json
{
"general.teamID": "4TQ6",
…