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We need an API that provides a way to compare any Tact AST:
* [x] `AstComparator`:
+ [x] Provide an API to check AST equivalence without renaming
* [x] `AstHasher`: Write the hashing module tha…
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Hello,
I was curious to know how annotation is handled after 2 dbg graphs are merged using VariMerge? Is there an annotation tool (for bacteria) that the authors of this software would recommend al…
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Hi, I try to use get_blunted(pre-compile) on graphs which are compacted de Bruijn graph from Bifrost. My system is centos7 with gcc 9.4.
I test all the graphs which construct with 2 or 10 or 100 …
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Suffix trees are a clever way of holding strings that allows us to do really fast string operations such as, longest common sub-string. As well as others. It might make sense to construct our data int…
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Dear curators,
I tried to dig deeper into the nature research paper ([Bradley et al., 2015](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4703848/)). In terms of mixed infection read analysis, the a…
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when i run :
```
$ ./sc_hla_count_linux -b outs/possorted_genome_bam.bam -c outs/filtered_feature_bc_matrix/barcodes.tsv.gz -o ./outs -d HLA/IPDIMGT/download
```
report it …
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I got many gcsa files. Each of them is to one specific chromosome. How do I do to combine many gcsa files into one file?
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The Lancet team at NYGC wants to display their compressed de Bruijn graph GFAs on vgteam/sequenceTubeMap. However, when they run them through GetBlunted to bluntify them, the output GFAs seem to be ma…
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[Would the Bifrost (I believe it is actually pronounced very similarly to beef roast) colored deBruijn graph structure](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02135-8) pro…
nmb85 updated
3 years ago
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Hi,
I am interested in using GATB in long reads analysis as they seem more appealing with HiFi reads and ultra-long ONT reads. Is GATB specifically for NGS short reads? Will there be future support…