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Dear HyPhy developers,
I have recently been utilizing the HyPhy RELAX tool to analyze a set of ~2000 orthologous genes identified across various species of Drosophila and mosquitoes. In my analyses…
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Accommodate new parkour names in e-mail construction (drosophila -> D. melanogaster, latter parsed as. 'D. ').
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Hello! I have enjoyed using ENCODExplorer but I would like to query for Drosophila melanogaster. I tried using the organism, assembly, and biosample_type. Do you support other organisms besides Homo s…
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- _Drosophila melanogaster_ is an interesting subject for test data since
- the genome is small (±180Mb)
- there are only 4 chromosomes (can expect 6 chromosome arms after scaffolding because t…
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Hi everyone,
I have observed that one *Drosophila melanogaster* gene is present in two orthogroups:
```bash
(base) [orthobench-tests]: grep FBpp0309618 RefOGs/*txt
RefOGs/RefOG021.txt:FBpp0309…
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See https://github.com/auerbachs/BMDExpress-2/wiki/Additional-Information#supported-microarrays
Current list should be:
|ID |…
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Uberon itself makes use of taxon constraints to express the fact that we know that some terms are applicable/not applicable to a given taxon.
However, AFAIK most (if not all) of the taxon-specific …
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Hi, I'm using bioconductor version 3.16 with R 4.2, is there a way to install pfamAnalyzerR without having to update to R 4.4 and bioconductor 3.19?
-- this is to install IsoformSwitchAnalyzeR from…
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Hi, Heng!
We experimented with Drosophila melanogaster genome and found several strange things in minimap2 behaviour (Version: 2.8-r686-dirty). I've attached two our files for reproducing the issues …
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(This question was first raised in the [developmental stage ontologies](https://github.com/obophenotype/developmental-stage-ontologies/pull/102#discussion_r1799308335) repo, but as a side remark on a …