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Trying to perform any simulation with fiberfox ends up with the following error. Is happening both with linux and windows. I leave here the log text.
```
Logfile: /home/compa/Documents/Apps/MITK-…
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## Summary
I am trying to run qsiprep on a subject with multiple scan sessions and more than one dwi sequence collected in each session but it crashed with the following error:
```
Process Proces…
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Using `v 0.22.1`, I went to use patch2self as the denoising method (which I've done for every QSIPrep version since 0.11) and got this:
```
Traceback (most recent call last):
File "/opt/conda/…
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```
/home/oesteban/.miniconda3/envs/fmriprep/lib/python3.11/site-packages/dipy/denoise/noise_estimate.py:252: RuntimeWarning: divide by zero encountered in divide
s = sum_m2 / (2 * K * sigma**2)
…
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Mentioned in #3023 but warrants its own Issue.
If we want to assess impacts of changes to denoising procedures, in terms of both performance and efficacy, we need a database of exemplar data agains…
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This issue discusses data organization and file naming for new subjects for the `philadelphia-pediatric` dataset that our collaborators will share with us.
Current organization and naming:
```c…
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https://www.biorxiv.org/content/10.1101/2024.10.30.621081v1 just dropped, but github repo not yet public.
Not sure if this is DWI specific.
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## Summary
In `v. 0.22.0` and forward, the behavior of `--dwi-denoise-window` changed. Previously, not setting this parameter (thus `auto`) set `dwidenoise` to run with an extent window of 5x5x5 …
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I am using the getting started instruction on the (https://spinalcordtoolbox.com/) main page. I get to the register multimodal and use the code as shown below but when I get to the extract method I ge…
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Hello and sorry for my basic question.
We have acquired multi-shell data (3shells) and didn't find a concrete example for this type of dwi-data to work with qsiprep. Our dataset is bids-valid but …