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The EDAM ontology (https://edamontology.org) is a well established set of of ontology keywords for use in bioinformatics.
It would be great to have EDAM identifiers associated with channel inputs a…
ewels updated
1 month ago
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Following a need of @Sylmila
* expose it in the API
* allows to search for a topic like it is done in the autocomplet admin UI
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### What product(s) is this story for?
OpenChallenges
### As a user, I want
_No response_
### Description
The goal of this story is to update the existing `openchallenges-edam-etl` to effectively…
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request from @bebatut
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Terms to add
- [ ] Exposomics (topic)
- [ ] peak table (-> expression data)
- [x] MSP (-> mass spectrometry data format) https://github.com/edamontology/edamontology/issues/864
- [ ] Parquet for…
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Can we use the same terms as here?
https://bioportal.bioontology.org/ontologies/EDAM-BIOIMAGING/?p=classes&conceptid=http%3A%2F%2Fedamontology.org%2Foperation_0004
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### What product(s) is this story for?
OpenChallenges
### As a user, I want
_No response_
### Description
Depends on #2547
Load the transformed EDAM data generated in #2547 into the…
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Project Lead: @matuskalas
Mentor: @bgruening
Welcome to OLS-1! This issue will be used to track your project and progress during the program. Please use this checklist over the next few we…
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We need a way to propose new EDAM Terms if we find missing ones. I think for now we can add them to this issue.
We can follow up on integration later. The basic concept would be:
* make a comment…
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@jennaj informed me that she actually uses these so we should continue improving them!
We made a first round of improvements but here is an issue to collect ideas for future work
https://training…