-
/miniconda3/envs/busco/bin/vacmap:4: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
__import__('pkg_resources').run_script('V…
-
Hi,
I am trying the two methods: phmm and edlib. I found phmm has a high reproducibility, giving the same result between different runs. While edlib can give very different results. I am wondering …
-
Hi @srbehera
I wanted to try out your tool for clustering isoforms.
Unfortunately I get this error when I try to compile your code.
g++: error: ./edlib/edlib/src/edlib.cpp: No such file or direc…
-
For example, ```edlib.align("ACGT", "", k=1)``` returns ```4``` instead of ```-1```. Additionally, it appears that the CIGAR string and locations are unreliable when the query string is empty, as they…
-
Thanks for sharing the code. Can you also provide the source code that listed in EDLib.h, such as
EdgeMap *DetectEdgesByCannySR();
All the best..
-
Users must, in various contexts, be able to access and edit content made by others, Edlib must therefore support:
- micro collaboration contexts such as games, courses and learning paths
- macro coll…
-
Hi, I am trying to install pysam and edlib. It shows following error. Please suggest.
--
b) conda install -c bioconda pysam
c) conda install -c bioconda edlib
error-----------
Collecting pack…
-
I get error from both docker and poetry.
From docker I get:
> sudo docker-compose run app python -m recap_am.server
[sudo] password for tuan:
Building app
Step 1/8 : FROM python:3.7-slim
---…
-
Hi,
suggest to try edlib in place of parasail for alignment of pairs to get a speed up for longer comparisons. Potentially this can recover more good pairs if you go from 250 bp to full/long compar…
-
The Share view (previous standalone/F4M/folium view) is a naked display of Edlib content through links and currently look like this:
![Image](https://github.com/cerpus/Edlib/assets/38659798/51586bed-…