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Hello,
Thank you for the fantastic preprint article on The Great Genotyper. I am very interested in utilizing this tool for my analysis. However, I noticed that the documentation does not provide a…
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Hi there! Im new using this tool, so sorry in advance if I'm asking something silly.
I'm trying to use the `read_analysis.py` script for metagenome analysis, but I'm encountering issues with the ge…
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### Description of the bug
I have been processing tumor normal samples using sarek and I have results for 6/14 samples
The pipeline stopped and I tried re-running it but no luck. What I am trying now…
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Fastqc encounters an error with a fastq file from SRA with accession SRR29972717. It has only 81 reads, but one of the reads is 5,176,638 bp in length. Maybe it should handle unusual files like this i…
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With FastQC v0.12.1 (bioconda hdfd78af_0) on RHEL 9.4, we're seeing a discrepancy when using the "-d" and "--dir" flags to specify a non-standard directory for temporary files
```
$ fastqc -d "/te…
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Hi!I'm the beginner there!when I run the example code `cycads --fastq /opt/Cycads/test/ecoli.fq.gz --output_dir /data/work --sample_name fa `,there generate folder fa.so after quality control,whic…
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### Discussed in https://github.com/bio-raum/FooDMe2/discussions/76
Originally posted by **gregdenay** November 22, 2024
Hi @marchoeppner
some colleagues that are actively working on metho…
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I'm rerunning a pipeline after upgrading STAR to 2.9.4 and getting this error which used not to arise for the identical job.
It is unclear why this might now happen.
There is nothing in recent r…
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Hello,
We are currently running our _de novo_ transcriptome assembly project. We ran isONclust and isONcorrect separately instead of `isON_pipeline.sh` pipeline. Everything was perfectly fine until t…
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**Describe the bug**
Currently, if a sample is alone on a lane, we add the undetermined fastq files from that lane to the housekeeper bundle for the sample. However, we do this without any requirem…