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Hi
I'm trying to replicate some splice junctions in my long-read Kinnex data. Out of a total of 115 splice junctions, I managed to replicate about 100 from quantification obtained via the isoseq/SQ…
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http://doi.org/10.1038/srep32404 (https://www.nature.com/articles/srep32404)
> Data-driven phenotype analyses on Electronic Health Record (EHR) data have recently drawn benefits across many areas o…
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This issue contains monthly updates to the ranked list of PubMed papers for curation. The full list can be found [here](https://github.com/tanayshah2/bioregistry/blob/5560dcf284f2c0309287e0a5a551e435e…
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When using https://discovery.indra.bio/gene/discrete
- Often get timeout (504 error) with the default gene list, if including INDRA path-based analysis
- The result lists cannot be downloaded in any…
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Hi, when I run MutSig2CV using hg38 files like #10. There are some errors as below:
```
1.000000 [ 1946 377 85 13 3 6 ]
04:51:57 04:51:57 19260/19260 ZZZ3 0 0 CV 1.000…
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**Addition of Algorithm:**
My name is Matthew Marino. I am a CFDE GlyGEN summer intern working under Jeet Vora and Rene Ranzinger. I am currently trying to create multiomics workflows starting with…
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From #7 we see that ZBTB16 & SLC39A1 are strongly anti-correlated in ORF data and CRISPR data, and it's novel (not seen in Evotec KG).
Zinc finger and BTB domain-containing protein 16
SLC: Zinc t…
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I am using MAST on log-transformed tpm data. The scRNA-seq matrix is composed by 1346 cells × 27933 genes. I used a similar matrix before and I had not any problem in getting meaningful results from M…
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- [x] Take in low threshold of program weights to remove prior to run
- [x] Add in capability to use top N genes
- [x] Rename columns to standardized set (see below)
- [ ] Reconfigure dashapp to lo…
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Hello! I want to ask a question about the biological interpretation of horizontal gene transfer. I used MetaCHIP to get the genes that had a horizontal transfer between MAGs. The resulting genes are…