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**Signature/ networks over time**
- [ ] Are the DE genes in the signature the same over time for each cluster?
- [ ] How do the main components of the signature vary?
- [x] run for #V06 and c…
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Some users would like to visualize the expression of many genes at a time that represent a biological process, commonly known as a gene signature. This ticket is to support visualization of (potential…
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https://xenabrowser.net/datapages/?host=https%3A%2F%2Fucscpublic.xenahubs.net&dataset=ccle%2FCCLE_DepMap_18Q2_RNAseq_reads_20180502.log2
Let haitang.yang88@gmail.com and Don know when fixed.
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I keep throwing the same error every time I try to plot the drivers vs signatures plot:
> matprob sig.cols for(i in 1:nrow(matprob)){
+ g
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Getting an error in plot_signatures function:
Error in quantile.default(late_early, 0.05) :
missing values and NaN's not allowed if 'na.rm' is FALSE
Looking in more detail at the function, it…
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- [ ] ATAC
- Work in progress: https://github.com/openpipelines-bio/openpipeline/issues/398
- [ ] CCC analysis
- Robrecht lift over from Open Problems?
- [ ] DE analysis
- [ ] Gene signatures…
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Moved from: https://github.com/greenelab/adage-frontend/issues/142
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From Georgia:
Hi @dongbohu -
For your first point - gene name, PAO1 number and PA14 number would all be great, but if it h…
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when I try the code like this:
```
${pyscenic_path}/pyscenic aucell \
${inputs_loom} \
${output_path}/data.filt.reg.csv \
--output ${output_path}/${project}_data.filt.out_SCENIC.loom …
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Hello,
When I plot radars I can see gene expressions but when I try to plot signatures, I don't see them. Why could it be?
`
plot.states.radar(ref, query = query.projected, genes4radar = progra…