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We wanted to find out if SO is the place for a “genetic variation type” term or should it go in EDAM (under “genetic variation”) . There can be many “types” of genetic variations e.g. whole gene intr…
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Some genetic codes such as the Vertebrate Mitochondrial Code allow potentially different start codons / start amino acids. Is it possible to take this into account in diamond, e.g. by specifying that …
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Users may want to specify genetic changes that are relevant to a MAVE (e.g. a haplotype with variation that's not at the mutagenized locus or a risk allele that's present in the cell line).
We can …
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Bio.Algorithms.Translation.Codons contains the standard genetic code. Should there be a second codon map for mitochondrial genes? AGA and AGG are terminating codons in mitochondria, and UGA codes for …
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### Figure 1 | The SysNDD Concept, Curation Approach, and Tools
**Description:** This figure should illustrate the overall concept of SysNDD, including its purpose, the curation process, and the tool…
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https://doi.org/10.1101/235655 (https://www.biorxiv.org/content/early/2017/12/18/235655)
> The functions of proteins and RNAs are determined by a myriad of interactions between their constituent re…
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We have received a request to improve how the VCF Preprocessor recognizes homozygous reference INDELs. See the description and discussion of the issue on [a previous issue thread](https://github.com/P…
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When I started the refactor one of the goals was to try to replace the Genetic Algorithm SvgNest had implemented with [GeneticSharp](https://github.com/giacomelli/GeneticSharp). The refactor took me a…
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Since SNPs that are close to each other are passed down together in populations, genetic variability can separate different countries and geographical locations to a certain extent (see links). It wou…
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I'm not clear on the difference between the "Variation (C. elegans)" category:
Variation (C. elegans) (tpvace:0000001)
and the "allele (C. elegans)" category:
allele (C. elegans) (tpalce:0000…