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Hello, the NeoLoopFinder only support human genome? I want use on other genomes.
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```
File "/opt/conda/lib/python3.10/site-packages/cma/evolution_strategy.py", line 4392, in fmin2
res = fmin(objective_function, x0, sigma0,
File "/opt/conda/lib/python3.10/site-packages/cm…
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Hi, I found a new error!
```
from LingerGRN.preprocess import *
Datadir='/home/baldini/sc/tbx1-2022/python_analysis/LINGER/'# This directory should be the same as Datadir defined in the above 'Down…
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The following genomes did not download in Kalamari 5.3.3. I'm wondering if I need to replace these.
CP000927
CP000937
CP000949
CP000950
CP001010
NC_000907
NC_000915
NC_003454
NC_003888
NC_…
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### Description of the bug
Just a suggestion to maybe prune the `star` entries from the iGenomes config for this workflow, since they're not used for STARSolo? Maybe other irrelevant entries too, but…
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Hi im not sure if i built the reference genome ok
the slrum files told me its done
[IR_finder_venv] adi8897@moriah-gw-01:~/adi8897/IR_finder_venv/IRFinder-1.3.0/REF/Human-GRCh38-release110% cat slur…
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Hi pauline-ng,
I have a question about using reference genome to build my SIFT database.
I have two species (SP1 and SP2, for example). SP1 has a reference genome, while SP2 does not. SNP calling fo…
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Hello, I am trying to analyze RRBS data from M. californianus and there is a published scaffold genome that I used in Bismark to get bam and bed files. I want to visualize these against the genome so …
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Hello, can this tool be applied to prokaryotic genome, eukaryotic genome and viral genome?
Thanks for your reply!
Best wishes!
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### Description of feature
Hello! Thanks for developing such useful tool!
I noticed that currently, the genome parameter only accept human or mouse. I am wondering how could I use this tool to co…