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Hi,
is it possible to use a reference genome only as input ? I guess not after reading the README.
It might be interesting to look at BAMs too, but the primary use case would be detection of TEs…
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Hi @CSU-KangHu I want to ask if I test the human genome and it is diploid with two assembly FA files, do I need to put both FA files after the -- genome in my input
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Pouvoir utiliser new_genome() avec comme paramètres nombre d'entrée, nombre de sortie.
GehuL updated
2 weeks ago
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Hi @bede,
Great work on hostile, its very user friendly and nice for human microbiome research, however my group does some mouse microbiome research and I was wondering if you had thought about add…
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We should make our two main subworflows (``GENOME`` and ``GENOME_AND_ANNOTATION``) into workflows, as it makes more sense for the structure and modularization of the pipeline (we cannot use subworkflo…
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What is the command gc_create and where is it?
Command line executed:
python3 ui/egapx.py ./examples/input_D_farinae_small.yaml -o example_out
Command error:
.command.sh: line 20: gc_create: …
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Hi,
Is VACmap set up to do genome vs genome alignments? I could run in -mode L, however an assembled genome would have much fewer errors.
thanks.
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# Taxa prioritization
For all genomes listed in VEuPathDb, NCBI Viruses and https://www.niaid.nih.gov/research/niaid-biodefense-pathogens generate a table (row per taxon) that summarized genome assem…
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Dear developers,
I'm contacting you with a question about the new version of Smudgeplot just released.
Comparing it with the old versions, I've noticed that the command
> smudgeplot.py plot
d…
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Hi,
Is there a pipeline to obtain required input annotation files for any other genomes? For example, I have rice genome sequences in fasta and annotations in gff format, how to prepare the requir…