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Idea here is to identify an easy, or quick way, to perform a phylogenetic analysis with input genomes.
Idea is to:
Get all input genomes.
Plus the 10 closest genomes for each input.
Then perfo…
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I have assembled for a genome a "suspected" highly hetrozygous genome using hifi.
The assembled genome size is 8.2G, which gives following BUSCO results.
Could you please help me understand how t…
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Hi!
Thanks for developing dante_ltr. I tried to run dante and dante_ltr on a genome but received an error message during the dante_ltr step.
I ran dante and dante_ltr with the following commands…
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I'm doing gene expression analysis of mussel feet kept under different conditions (ocean acidification, warming, and hypoxia) relative to a control and I'm trying to see if the transcripts that code f…
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Hi I am having issue while running snpEff for annotating the vcf file.The process is getting killed while running. What might be causing the issue?
Please see the error mentioned below
```
java…
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I see for CRISPREessoWGS you need to specify an interval in which the analysis is run on. I'm wondering if CRISPresso can be run on the entire genome (entire WGS data)?
Thanks!
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Hi again!
Just thinking about the RefSeq versus GenBank question for analysis of a metagenome (containment). Aware that Sourmash may struggle with similar genomes (ie strains) due to a smaller numb…
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Hello @cdanielmachado, other developers and all in the community,
I am interested in performing analysis on my genome-scale community model, which I created using CarveMe. Specifically, I want to u…
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Dear authors,
I tried to run the Sequeduct demo pipeline https://github.com/Edinburgh-Genome-Foundry/Sequeduct_demo/
However, at the end of the pipeline, the PDF generated only the first 2 pages, …
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Is it possible to use cnvkit to analyze mitochondrion genome? Is it necessary to drop chrM from reference.cnn?