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Hi Diener,
would it possible to provide detailed description on the procedures that generated those GEM reference database? I found it quite useful while I am hesitating to use it in my manuscript wi…
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Hi,In the reported paper "Reconstruction and analysis of a Kluyveromyces marxianus genome-scale metabolic model", ``r_1912`` is the biomass production reaction in which the protein coefficient is the …
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## Target functionality
tINIT is an (umbrella name for an) algorithm that obtains a subset of a genome-scale metabolic model based on the gene expression (typically in healthy/diseased bulk tissue …
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#### Problem description
Please explain:
* I tried to upload a genome scale metabolic model in its sbml form to http://memote.io/,
*However an error occured and i couldn't upload the model.
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### Description of the issue:
Hello,
I am trying to reconstruct genome-scale metabolic models using RAVEN. I tried the following approaches:
1. Based on KEGG organism code as outlined [here](ht…
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Hello!
I want to use eggnog-mapper (web-version) output to build genome-scale metabolic model via CarveMe tool so I am interested in BiGG reaction ids. For some reason no bigg reaction ids was foun…
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Dear authors,
I have some questions about the process of cell lysis in BacArena.
What happened after cells died with their lysis parameter on (lyse=T)? Would the biomass composition be released …
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Opening this issue on behalf of Anush @anushchp:
#### Problem description
> It complains that O2 consuming reactions don’t have fixed bounds. Thermodynamics (using pyTFA: https://github.com/EPFL-…
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Carsten Zengler confirmed consumption of metabolites in S. elongatus. We can use this to confirm nonzero uptake flux (but not growth).