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Will need this to highlight in the eventual publication
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Hi!
I am using Hmmer3 with bivalve genomes looking for 70-80 aa genes. BUSCO scores for the genomes are in the upper 90s (96-98% complete for BUSCO Metazoa) and most assemblies are chromosome-scale…
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Hi Toshiyuki,
Congrats on developing this tool! I have a question on potential application of this gene cluster analysis:
I have RenSeq contigs and gene models. I would like to map them to a re…
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## Target functionality
tINIT is an (umbrella name for an) algorithm that obtains a subset of a genome-scale metabolic model based on the gene expression (typically in healthy/diseased bulk tissue …
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Hi James,
I'm trying to compare draft reconstructions of genome scale models for closely related strains of a species. Does sbml-diff have a functionality to only print the changes (maybe with a re…
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Hey all-- I'm opening up an issue for us to start bashing away at an outline for the second paper. a particular goal is to have a solid list of the analyses we want to do and then later, delegation of…
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In the discussion with @Midnighter it came up that there should be a generic support for compressed files for the various io modules. I.e. cobrapy should support the reading and writing of compressed …
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Hi all,
Thanks for this great tool! I have a question on its use though.
Could the user examine the binding specificity of the motifs in your models by querying a sequence > 10000b introducing an …
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> Advanced machine learning models applied to large-scale genomics datasets hold the promise to be major drivers for genome science. Once trained, such models can serve as a tool to probe the relation…
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**Background**:
- cBioPortal: [cBioPortal](https://github.com/cBioPortal/GSoC/issues/www.cbioportal.org) is an open-source platform for cancer genomics data analysis and visualization. It provides a…
inodb updated
4 months ago