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In this document, the aboundance of spaces in the middle of the extracted URL makes sure that our regex falls short. However, the annotation are correct, but we somehow do not extend the matching beyo…
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Thank you very much for your software output, which provides a new workflow for viral group research!
```
Building a new DB, current time: 03/09/2024 10:19:13
New DB name: /home/zhongpei/hard_dis…
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This issue can serve as a placeholder for use cases for sourmash/MinHash more generally.
Stuff we already have implemented:
* basic MinHash comparisons etc
* metagenome taxonomy breakdown
* st…
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To do:
- [ ] Co-assembly of ROCK samples
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Hello,
I have read the manuscript: An image processing method for metagenomic binning: multi-resolution genomic binary patterns
and I would like to use the software. I have read the installation…
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Hi, I trimmd host plant sequence via kneaddata, and then run below command to trim human sequence,
```bash
nohup time metawrap read_qc -1 STA-032A_1.fastq -2 STA-032A_2.fastq -t 20 -o ./test/STA-032…
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### Description of the bug
We are trying to redirect the scratch to /tmp on the BOWTIE2 task but it fails with:
> FATAL: container creation failed: mount /tmp/nxf.cN0zaFFBsi->/tmp/nxf.cN0zaF…
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Hello,
I met an error when using infercnv::run() function. I used leiden_method="simple" instead of pca, which was suggested in previously related issues. However this problem still exists. Can you…
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Hi I'm having an issue with running concoct. It fails to run and produces the following warning. I've also tried running it in the metaWRAP environment step by step according to concocts' instructions…
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Hi, First thank you for providing excellent documentation on FitHiChIP!
I am running FitHiChIP on my HiChIP data generated from HiCPro (.allValidPairs). I am using the following parameters.
```
I…