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### Description of the bug
Hi,
PanGraphViewer [failed]( https://github.com/TF-Chan-Lab/panGraphViewer/issues/1#issuecomment-2303887733 ) to convert your pipeline's GFA file to rGFA.
By any chance…
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HapHiC is working very well so far, and now we would like to fine-tune the scaffolding (looking into more of the options, and comparing different input versions).
**My question:** Is it possible t…
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Dear Panacus,
Thank you for developing such a great program.
I’m interested in testing the "Ordered Pangenome Growth Statistics" for a PGGB GFA file. However, the manual only provides guidance f…
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The vg version I use: version :
v1.59.0
I used PGGB to construct a pan-genome (GFA); I want to rely on him to find the SNP of the sample; Here's my current script:
vg autoindex -t …
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Could you please help me refine my workflow for assembling a phased triploid genome using hifiasm and HapHiC?
Here is the current plan:
1. Run the hifiasm pipeline with Hi-C data for triploid as…
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This issue replaces desihub/gfa_reduce#24.
When processing daily data, `desi_tsnr_afterburner` reads and replaces NaN in *all* exposures in *all* GFA summary files, with the result that rare NaNs t…
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### Description of bug
binspreader threw an error while parsing assembly_graph_with_scaffolds.gfa. It looks like there are semicolons where the program was expecting tabs. I did not modify the assemb…
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**1. What were you trying to do?**
Trying to run the vg gbwt command
**2. What did you want to happen?**
Command to provide
**3. What actually happened?**
Terminal Output:
```
terminate…
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Good afternoon!
I'm sorry to bother you.
Could you please advise me what could supposedly be wrong with my results?
I saw a thread above with a similar case.
But I'm confused by the fact that my …
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@lh3, I'm curious to know , whether we can convert `GFA` to `rGFA`? . As per [rGFA](https://github.com/lh3/gfatools/blob/master/doc/rGFA.md) format, we need to maintain 3 additional information along…
gsc74 updated
3 weeks ago