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##### Project link
https://github.com/orgs/geneontology/projects/TBD
##### Project description
The prerequisite for this project is #66, which adds pathway/GO-CAM widgets to AmiGO and adds a mo…
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If the root ontology is incoherent[*] then inferences will be wrong (and reasoning time may explode). the OWLAPI doesn't fail fast (as expect, so it can be used in a debugging environment, e.g. proteg…
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TODO: explore whether it makes sense to
1. name a shortcut relation for all association path
2. extend OBAN model to allow the relation to be a list (interpreted as a chain)
Tending towards …
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Add the created_by and creation_date into the ontology and annotation loads.
https://github.com/geneontology/amigo/issues/507
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Dipper should not introduce blank nodes unless either they are present in the structure of the source or if it does work for us in reasoning. The structure of the graph should reflect the current solr…
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eukaryotic subset here:
ftp://ftp.ebi.ac.uk/pub/databases/reference_proteomes/QfO/Eukaryota/
primarily this will serve as an identifier mapping resource - see #410. We won't need to map IDs ahea…
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We have a query that infers phenotype to pathway associations through gene/variant to phenotype associations, optionally through orthologs. I'm not sure if it's biologically accurate to make these in…
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See https://github.com/geneontology/amigo/issues/240
The golr loader should make sure that GAF `A` does not overwrite GPI-level metadata from GAF `B`. This could happen a few ways. We could use metad…
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to avoid #169
we could mint upheno classes that are superclasses of MP/HP. This means rather than
```
MP:abnormal-X Equiv HP:abnormal-X
```
which is very powerful axiomatically, which has the down…
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All categories other than gene and disease return empty for the /api/search/entity endpoint:
https://api.monarchinitiative.org/api/search/entity/e?start=1&category=variant&rows=1
https://api.monarch…