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Dear @jrotieno,
Could I know how do you align HCoV sequence?
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* We are using two models, one to predict whether infections are increasing or decreasing, and a second to estimate the number of infections given increasing infections.
* I recently found that two…
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I've noticed that the proportion of `BA.2* + S:452R, S:486V, S:493.` in South Africa (and elsewhere) has been rising recently.
These should really be BA.4/5 but are misassigned, either by pangoLEAR…
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KP.3.3 plus S:A27P, 5 samples Japan
3 from Saitama and 2 from Tokyo
Query: Spike_A27P, Spike_Q493E
NEW Nuc Query: C7299T, C28291A, -A4364C, -C6543T (by @Over-There-Is )
(Old Nuc Query: T21610C,C…
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Hi,
The QTLtools documentation states that "The missing values should be encoded as NA" (https://qtltools.github.io/qtltools/pages/input_files.html). How are NAs in covariate files handled? Are the…
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Get data from these three sources and add to the metadata file
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https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE89159
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When I used `gofasta sam variants`, it reported this error:
```bash
gofasta sam variants -a /Raid5/lixiang/Indel_accession/reference/NC_045512.2.gb --start 266 --end 29674 --append-snps -t 36 -s 0…
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Collection of all available sequences for pathogenic and non pathogenic HCovs
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Hi @bernatgel
Thank you for the awesome tool.
I have a bedgraph data containing genomic window and motif count
```
chr1 150000 150010 353
chr10 150000 150010 326
chr10 134700000 134700010 22…