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From 9/6/23 AHM: we have almost everything in Hetionet, except for WikiPathways and SIDER. Since Hetionet is no longer being maintained, we should consider bringing these sources in.
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I'm seeking the source data for the Gene Ontology (Biological Process) in hetio for 2015. According to this [manuscript](https://git.dhimmel.com/rephetio-manuscript/), hetio contains 559,504 annotatio…
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### Data Source
https://het.io/
### Note
From Trello Pending List - https://trello.com/c/aBr0Ys7Z
Hetionet data from Daniel Himmelstein
### Script to load
### Idempotent
### Dependencies
N…
Jiros updated
3 years ago
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### Describe the bug
When I want to import Hetionet in PyKeen, there is a 404 error as the target URL in the source code is not functioning. Please check and update the function of Hetionet().
S…
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The function get_hetionet() in pybel.io.hetionet no longer works, due to the use of the key "source" in the annotations dictionary.
Here is a stacktrace:
```
----> 1 hetio = pybel.get_hetionet()
…
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Hi Daniel,
Just wanted to note that there are still duplicate edges in hetionet in the newest `integrate.ipynb`. Specifically, the following two types of relationships give duplicate edge errors wh…
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Hetionet (Biomedical Hetnet)
https://het.io/
Data: https://github.com/hetio/hetionet
Possible license: https://github.com/hetio/hetionet#license
Note that the licensing seems to be a work in p…
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This looks very similar to what has already been done by https://github.com/hetio/hetionet. Would you please add documentation explaining how this is different? Did you try using hetionet for this tas…
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As part of a research project, I am using DRKG (The Drug Repurposing Knowledge Graph) and am hoping to map it to biolink so that I can do some analysis comparing DRKG and ROBOKOP.
Would it be pos…
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https://github.com/RoyZhengGao/edge2vec/blob/e6637e638919b364ac081826c68879daf182ae73/transition.py#L108
Hi Zheng Gao:
I applied edge2vec to @dhimmel hetionet, it has more than 2 million edges. …