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# User story
As a user, I want to be able to fetch all the information for a given specimen id in the histology workflow. First, attempt making a grid for SLIMS Histology info + fetch from grid. If G…
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Experimental notebook with various ways to process the histology images to mimic the MRI images.
At the moment, without the info about the pixel size in histology images, rescaling is not meaningful.…
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### Is your feature request related to a problem? Please describe.
Currently, GaNDLF only supports radiology images for anonymization [[ref](https://github.com/mlcommons/GaNDLF/blob/master/GANDLF/ano…
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The procedures endpoint needs to integrate specimen procedures from the SLIMS Histology workflow.
Acceptance criteria
- [ ] an API exists for fetching metadata from the SLIMS Histology workflow calle…
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Histology
- Histology type
- Immunohistochemistry or immunofluorescence
- In paraffin or frozen
- Brain was sliced or not
- Thickness
- Parts of the brain (whole vs half)
- What protocol …
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Here is a copy of the notes I've compiled after our meeting and while thinking/reading on the topic. I put it here to help for our next meeting. Many pieces of the process are still unclear to me and …
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how to get histology in SPATA2?
I run it but only get NULL> getSpatSegmVarN…
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@anhtuduong I just create histology data folder in my repository. There are histology data of the first 300 cases.
I also extract useful information`tumor_histologic_subtype` to a text file name:`tum…
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**Describe the bug**
While trying the [Quick Start Guide](https://openfl.readthedocs.io/en/latest/get_started/quickstart.html#creating-a-federation-in-5-steps) for model **tf_cnn_histology**, the fed…
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Hello,
I have the probe track obtained from AJ Peters pipeline (https://github.com/petersaj/AP_histology), which gives the structure called probe_ccf as its output. Instead of using the last step of …