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I have a few 10xVisium tissue section and associated spatial transcriptomics data. The spaceranger process has been done correctly judging based on the fiducials of the images which has been aligned t…
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Hi everyone,
I analyzed Visium spatial transcriptomics data using squidpy.
When using "spatial_scatter", is it possible to not show specific dots with a gene expression leven below a certain t…
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We are certain that we will be receiving a new data type. Spatial Transcriptomics ([the specific technique](https://spatialtranscriptomics.com/)) will be carried out by Anna Wilbrey-Clark (Sanger). Th…
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Hi David,
**Description:**
In the paper titled "Inferring Super-Resolution Tissue Architecture by Integrating Spatial Transcriptomics with Histology", it is described that to align feature images,…
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Hope all is well! I was hoping to try and use VALIS to register my sections from different patients to a standard space so that I could perform downstream topographical analyses. An example of the sta…
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Hi,
Thank you very much for putting together this code.
I would like to better understand when Bulk2Space might help versus when there are limits to applicability to Bulk2Space, following a jour…
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I propose a new UBKG model to address three separate requests.
# Requests
1. The UBKG should be the source of truth for the assay metadata currently managed in the value object of the soft assay t…
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We need examples of the types of experiments and queries which are going to be executed against `data-refinery` data.
These examples should include the perspectives from bioinformaticist, bench re…
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# Statement of problem
Datasets are being reorganized to support dynamic pipeline assignment--aka "soft assay type".
[Reference](https://docs.google.com/spreadsheets/d/1aCcGFoTWrBEb2ncN4XiV6rcT…
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## Keyword: efficient
### End-to-end codesign of Hessian-aware quantized neural networks for FPGAs and ASICs
- **Authors:** Javier Campos, Zhen Dong, Javier Duarte, Amir Gholami, Michael W. Mahoney,…