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Hey Michael,
For a current project we are working on, we are trying to use Sage with HLA peptides, specifically from the [thunderPASEF method](https://www.nature.com/articles/s41467-024-46380-y). W…
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[log_2024-07-04_13-17-58.zip](https://github.com/user-attachments/files/16098789/log_2024-07-04_13-17-58.zip)
Hi, I am writing you as I have an issue running nonspecific- HLA-DIA search with the …
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**Preferred term label:**
Anti-HLA-DQ antibody positivity
**Synonyms**
Donor specific antibody positivity,
**Definition (free text, please give PubMed ID)**
The presence of autoantibodies (…
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Good morning, I wanted to ask for some guidance regarding an issue I've been running into while genotyping structural variants using graphtyper. I am attempting a test-run of graphtyper v2 on multiple…
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The `DnssecResolverApi` class extends the `ResolverApi` and creates its own `DnssecClient` with its own secure separate cache, but it never overrides the inherited `getClient()` function.
https://git…
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hey,
I find this tool only support A/B/C , it is work for other alleles ?
Expecting your reply !
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I also met this problem using `odgi extract` like #572 , odgi somehow keeps the node which needs to be removed in my bed file
I have a node `1435085` in the raw graph which is too long and so simpl…
yeeus updated
2 weeks ago
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Hello,
I am trying to run hisatgenotype. I installed both hisat2/2.2.1 and hisatgenotype. Here's my exact command:
```
python3 /cluster/home/user/hisatgenotype/hisatgenotype --base hla --locus-li…
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When making prediction using predict.py, here is the example input
,CDR3b,CDR3a,peptide,MHC,binder
0,CASSIRASYEQYF,CAGASGNTGKLIF,GILGFVFTL,HLA-A*02:01,1
1,CASSIRSTDTQYF,CAGSGGGSQGNLIF,GILGFVFTL,H…
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What is the best way to obtain counts of two alleles of each HLA subtype? I tried to include both alleles, but the resulting matrix contains some extra rows (using -f and -g option).
For example, t…